Detailed information of SNP:
|
SNP ID:
sf0224503719(Gbrowse)
Chromosome: chr02 Position: 24503719 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 52.67% | 47.33% |
| All Indica | 796 | 66.08% | 33.92% |
| All Japonica | 491 | 33.40% | 66.60% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 373 | 87.67% | 12.33% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 210 | 53.81% | 46.19% |
| Temperate Japonica | 332 | 32.53% | 67.47% |
| Tropical Japonica | 91 | 30.77% | 69.23% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224503719 | T->C | INTERGENIC | None |