Detailed information of SNP:
|
SNP ID:
sf0224503738(Gbrowse)
Chromosome: chr02 Position: 24503738 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 79.57% | 20.43% |
| All Indica | 796 | 85.43% | 14.57% |
| All Japonica | 491 | 68.43% | 31.57% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 211 | 66.35% | 33.65% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 331 | 65.26% | 34.74% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224503738 | G->A | INTERGENIC | None |