Detailed information of SNP:
|
SNP ID:
sf0224504226(Gbrowse)
Chromosome: chr02 Position: 24504226 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 53.08% | 46.92% |
| All Indica | 793 | 30.52% | 69.48% |
| All Japonica | 495 | 88.28% | 11.72% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 371 | 18.06% | 81.94% |
| Indica II | 212 | 33.02% | 66.98% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 333 | 93.99% | 6.01% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224504226 | G->A | INTERGENIC | None |