Detailed information of SNP:
|
SNP ID:
sf0224506763(Gbrowse)
Chromosome: chr02 Position: 24506763 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.47% | 3.53% |
| All Indica | 797 | 96.24% | 3.76% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224506763 | A->T | INTERGENIC | None |