Detailed information of SNP:
|
SNP ID:
sf0224517251(Gbrowse)
Chromosome: chr02 Position: 24517251 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 79.39% | 20.61% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 495 | 67.68% | 32.32% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224517251 | T->C | LOC_Os02g40450(LOC_Os02g40450.1) | INTRON |