Detailed information of SNP:
|
SNP ID:
sf0224523260(Gbrowse)
Chromosome: chr02 Position: 24523260 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 88.14% | 11.86% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 495 | 76.57% | 23.43% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 73.95% | 26.05% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224523260 | G->A | LOC_Os02g40454(LOC_Os02g40454.1) | INTRON |
| sf0224523260 | G->A | LOC_Os02g40454(LOC_Os02g40454.2) | INTRON |