Detailed information of SNP:
|
SNP ID:
sf0224524007(Gbrowse)
Chromosome: chr02 Position: 24524007 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 62.45% | 37.55% |
| All Indica | 795 | 68.55% | 31.45% |
| All Japonica | 480 | 48.33% | 51.67% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 212 | 51.42% | 48.58% |
| Indica Intermediate | 208 | 63.46% | 36.54% |
| Temperate Japonica | 321 | 45.48% | 54.52% |
| Tropical Japonica | 92 | 59.78% | 40.22% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224524007 | C->A | LOC_Os02g40454(LOC_Os02g40454.1) | Non-Synonymous SNP |
| sf0224524007 | C->A | LOC_Os02g40454(LOC_Os02g40454.2) | SNPs that introduce stop codons |