Detailed information of SNP:
|
SNP ID:
sf0224524016(Gbrowse)
Chromosome: chr02 Position: 24524016 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 62.68% | 37.32% |
| All Indica | 794 | 68.64% | 31.36% |
| All Japonica | 480 | 48.75% | 51.25% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 212 | 51.42% | 48.58% |
| Indica Intermediate | 207 | 63.77% | 36.23% |
| Temperate Japonica | 321 | 46.11% | 53.89% |
| Tropical Japonica | 92 | 59.78% | 40.22% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224524016 | C->A | LOC_Os02g40454(LOC_Os02g40454.1) | Non-Synonymous SNP |
| sf0224524016 | C->A | LOC_Os02g40454(LOC_Os02g40454.2) | Non-Synonymous SNP |