Detailed information of SNP:



SNP ID: sf0224524016(Gbrowse)

Chromosome: chr02

Position: 24524016
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1396 62.68% 37.32%
All Indica794 68.64% 31.36%
All Japonica480 48.75% 51.25%
Aus67 85.07% 14.93%
Indica I375 81.07% 18.93%
Indica II212 51.42% 48.58%
Indica Intermediate207 63.77% 36.23%
Temperate Japonica321 46.11% 53.89%
Tropical Japonica92 59.78% 40.22%
Japonica Intermediate67 46.27% 53.73%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 60.98% 39.02%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0224524016 C->A LOC_Os02g40454(LOC_Os02g40454.1) Non-Synonymous SNP
sf0224524016 C->A LOC_Os02g40454(LOC_Os02g40454.2) Non-Synonymous SNP