Detailed information of SNP:
|
SNP ID:
sf0224524489(Gbrowse)
Chromosome: chr02 Position: 24524489 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 97.53% | 2.47% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 494 | 95.55% | 4.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 333 | 94.89% | 5.11% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224524489 | C->A | LOC_Os02g40454(LOC_Os02g40454.1) | INTRON |
| sf0224524489 | C->A | LOC_Os02g40454(LOC_Os02g40454.2) | INTRON |