Detailed information of SNP:
|
SNP ID:
sf0224534728(Gbrowse)
Chromosome: chr02 Position: 24534728 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 96.87% | 3.13% |
| All Indica | 789 | 98.23% | 1.77% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 369 | 98.64% | 1.36% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 10 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224534728 | G->A | INTERGENIC | None |