Detailed information of SNP:
|
SNP ID:
sf0224535359(Gbrowse)
Chromosome: chr02 Position: 24535359 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 95.72% | 4.28% |
| All Indica | 788 | 95.05% | 4.95% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 60 | 75.00% | 25.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 203 | 83.74% | 16.26% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224535359 | C->T | LOC_Os02g40470(LOC_Os02g40470.1) | Non-Synonymous SNP |