Detailed information of SNP:
|
SNP ID:
sf0224537890(Gbrowse)
Chromosome: chr02 Position: 24537890 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1311 | 92.60% | 7.40% |
| All Indica | 710 | 91.97% | 8.03% |
| All Japonica | 486 | 93.21% | 6.79% |
| Aus | 60 | 90.00% | 10.00% |
| Indica I | 326 | 91.72% | 8.28% |
| Indica II | 197 | 96.45% | 3.55% |
| Indica Intermediate | 187 | 87.70% | 12.30% |
| Temperate Japonica | 325 | 92.31% | 7.69% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224537890 | C->T | INTERGENIC | None |