Detailed information of SNP:
|
SNP ID:
sf0224544384(Gbrowse)
Chromosome: chr02 Position: 24544384 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 87.50% | 12.50% |
| All Indica | 796 | 87.31% | 12.69% |
| All Japonica | 491 | 93.69% | 6.31% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224544384 | C->T | INTERGENIC | None |