Detailed information of SNP:
|
SNP ID:
sf0224546529(Gbrowse)
Chromosome: chr02 Position: 24546529 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 93.64% | 6.36% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 63.98% | 36.02% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224546529 | C->T | INTERGENIC | None |