Detailed information of SNP:
|
SNP ID:
sf0224549948(Gbrowse)
Chromosome: chr02 Position: 24549948 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 92.69% | 7.31% |
| All Indica | 798 | 98.37% | 1.63% |
| All Japonica | 488 | 82.17% | 17.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 328 | 75.91% | 24.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224549948 | G->A | INTERGENIC | None |