Detailed information of SNP:
|
SNP ID:
sf0224559995(Gbrowse)
Chromosome: chr02 Position: 24559995 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1396 | 55.44% | 44.56% |
| All Indica | 790 | 77.59% | 22.41% |
| All Japonica | 484 | 17.77% | 82.23% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 89.81% | 10.19% |
| Indica II | 210 | 74.29% | 25.71% |
| Indica Intermediate | 207 | 58.94% | 41.06% |
| Temperate Japonica | 324 | 13.89% | 86.11% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224559995 | C->T | INTERGENIC | None |