Detailed information of SNP:
|
SNP ID:
sf0224567821(Gbrowse)
Chromosome: chr02 Position: 24567821 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 94.50% | 5.50% |
| All Indica | 799 | 98.37% | 1.63% |
| All Japonica | 496 | 89.52% | 10.48% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 85.97% | 14.03% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224567821 | G->T | LOC_Os02g40514(LOC_Os02g40514.1) | UTR_3_PRIME |
| sf0224567821 | G->T | LOC_Os02g40514(LOC_Os02g40514.2) | UTR_3_PRIME |