Detailed information of SNP:
|
SNP ID:
sf0224568565(Gbrowse)
Chromosome: chr02 Position: 24568565 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 87.09% | 12.91% |
| All Indica | 798 | 90.35% | 9.65% |
| All Japonica | 496 | 82.26% | 17.74% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 334 | 80.84% | 19.16% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224568565 | T->C | LOC_Os02g40514(LOC_Os02g40514.1) | INTRON |
| sf0224568565 | T->C | LOC_Os02g40514(LOC_Os02g40514.2) | INTRON |