Detailed information of SNP:
|
SNP ID:
sf0224572598(Gbrowse)
Chromosome: chr02 Position: 24572598 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 90.11% | 9.89% |
| All Indica | 797 | 86.57% | 13.43% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 52.31% | 47.69% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 56.87% | 43.13% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224572598 | G->A | INTERGENIC | None |