Detailed information of SNP:
|
SNP ID:
sf0224577450(Gbrowse)
Chromosome: chr02 Position: 24577450 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 91.84% | 8.16% |
| All Indica | 791 | 89.51% | 10.49% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 210 | 68.10% | 31.90% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224577450 | C->T | INTERGENIC | None |