Detailed information of SNP:
|
SNP ID:
sf0224581572(Gbrowse)
Chromosome: chr02 Position: 24581572 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 95.19% | 4.81% |
| All Indica | 797 | 97.87% | 2.13% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 92.51% | 7.49% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224581572 | C->T | INTERGENIC | None |