Detailed information of SNP:
|
SNP ID:
sf0224586165(Gbrowse)
Chromosome: chr02 Position: 24586165 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.77% | 9.23% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 497 | 83.30% | 16.70% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224586165 | G->A | INTERGENIC | None |