Detailed information of SNP:
|
SNP ID:
sf0224586571(Gbrowse)
Chromosome: chr02 Position: 24586571 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 91.57% | 8.43% |
| All Indica | 796 | 87.94% | 12.06% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 212 | 66.04% | 33.96% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224586571 | C->T | LOC_Os02g40540(LOC_Os02g40540.1) | Non-Synonymous SNP |