Detailed information of SNP:
|
SNP ID:
sf0224587116(Gbrowse)
Chromosome: chr02 Position: 24587116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 89.99% | 10.01% |
| All Indica | 791 | 86.35% | 13.65% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 210 | 63.81% | 36.19% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224587116 | G->A | LOC_Os02g40540(LOC_Os02g40540.1) | INTRON |