Detailed information of SNP:
|
SNP ID:
sf0224599061(Gbrowse)
Chromosome: chr02 Position: 24599061 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 95.66% | 4.34% |
| All Indica | 787 | 93.90% | 6.10% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 90.22% | 9.78% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224599061 | G->A | LOC_Os02g40570(LOC_Os02g40570.1) | Non-Synonymous SNP |