Detailed information of SNP:
|
SNP ID:
sf0224614760(Gbrowse)
Chromosome: chr02 Position: 24614760 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 74.96% | 25.04% |
| All Indica | 793 | 78.44% | 21.56% |
| All Japonica | 490 | 71.63% | 28.37% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 329 | 72.34% | 27.66% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224614760 | C->G | INTERGENIC | None |