Detailed information of SNP:
|
SNP ID:
sf0224614770(Gbrowse)
Chromosome: chr02 Position: 24614770 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 70.73% | 29.27% |
| All Indica | 789 | 78.58% | 21.42% |
| All Japonica | 485 | 61.24% | 38.76% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 371 | 94.61% | 5.39% |
| Indica II | 208 | 52.40% | 47.60% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 324 | 58.95% | 41.05% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224614770 | T->C | INTERGENIC | None |