Detailed information of SNP:
|
SNP ID:
sf0224614904(Gbrowse)
Chromosome: chr02 Position: 24614904 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 74.24% | 25.76% |
| All Indica | 777 | 81.21% | 18.79% |
| All Japonica | 476 | 65.34% | 34.66% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 201 | 56.22% | 43.78% |
| Indica Intermediate | 204 | 79.41% | 20.59% |
| Temperate Japonica | 317 | 64.04% | 35.96% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 66 | 56.06% | 43.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224614904 | T->C | INTERGENIC | None |