Detailed information of SNP:
|
SNP ID:
sf0224615381(Gbrowse)
Chromosome: chr02 Position: 24615381 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 55.88% | 44.12% |
| All Indica | 774 | 34.37% | 65.63% |
| All Japonica | 495 | 90.30% | 9.70% |
| Aus | 65 | 58.46% | 41.54% |
| Indica I | 364 | 17.58% | 82.42% |
| Indica II | 204 | 56.86% | 43.14% |
| Indica Intermediate | 206 | 41.75% | 58.25% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224615381 | A->G | INTERGENIC | None |