Detailed information of SNP:
|
SNP ID:
sf0224616489(Gbrowse)
Chromosome: chr02 Position: 24616489 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.14% | 49.86% |
| All Indica | 797 | 25.97% | 74.03% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 5.33% | 94.67% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 209 | 36.36% | 63.64% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224616489 | T->G | INTERGENIC | None |