Detailed information of SNP:
|
SNP ID:
sf0224617377(Gbrowse)
Chromosome: chr02 Position: 24617377 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 91.64% | 8.36% |
| All Indica | 794 | 88.41% | 11.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 208 | 65.87% | 34.13% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224617377 | A->T | INTERGENIC | None |