Detailed information of SNP:
|
SNP ID:
sf0224622606(Gbrowse)
Chromosome: chr02 Position: 24622606 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 72.73% | 27.27% |
| All Indica | 799 | 55.69% | 44.31% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 28.80% | 71.20% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224622606 | C->T | INTERGENIC | None |