Detailed information of SNP:
|
SNP ID:
sf0224627367(Gbrowse)
Chromosome: chr02 Position: 24627367 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 59.26% | 40.74% |
| All Indica | 794 | 45.34% | 54.66% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 371 | 25.88% | 74.12% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224627367 | G->A | INTERGENIC | None |