Detailed information of SNP:
|
SNP ID:
sf0224630443(Gbrowse)
Chromosome: chr02 Position: 24630443 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 65.31% | 34.69% |
| All Indica | 781 | 43.02% | 56.98% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 359 | 23.40% | 76.60% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 210 | 59.05% | 40.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224630443 | C->A | INTERGENIC | None |