Detailed information of SNP:
|
SNP ID:
sf0224633442(Gbrowse)
Chromosome: chr02 Position: 24633442 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 63.37% | 36.63% |
| All Indica | 794 | 40.30% | 59.70% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 372 | 19.09% | 80.91% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 209 | 57.42% | 42.58% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224633442 | G->A | INTERGENIC | None |