Detailed information of SNP:
|
SNP ID:
sf0224633459(Gbrowse)
Chromosome: chr02 Position: 24633459 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 54.43% | 45.57% |
| All Indica | 767 | 38.33% | 61.67% |
| All Japonica | 497 | 77.46% | 22.54% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 364 | 16.48% | 83.52% |
| Indica II | 209 | 60.29% | 39.71% |
| Indica Intermediate | 194 | 55.67% | 44.33% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224633459 | C->T | INTERGENIC | None |