Detailed information of SNP:
|
SNP ID:
sf0224633603(Gbrowse)
Chromosome: chr02 Position: 24633603 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 53.64% | 46.36% |
| All Indica | 796 | 37.56% | 62.44% |
| All Japonica | 496 | 77.82% | 22.18% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 372 | 16.67% | 83.33% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224633603 | C->T | INTERGENIC | None |