Detailed information of SNP:
|
SNP ID:
sf0224634453(Gbrowse)
Chromosome: chr02 Position: 24634453 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 96.48% | 3.52% |
| All Indica | 758 | 94.99% | 5.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 52 | 82.69% | 17.31% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 178 | 81.46% | 18.54% |
| Indica Intermediate | 205 | 97.56% | 2.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224634453 | C->A | INTERGENIC | None |