Detailed information of SNP:
|
SNP ID:
sf0224634617(Gbrowse)
Chromosome: chr02 Position: 24634617 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 76.85% | 23.15% |
| All Indica | 786 | 70.87% | 29.13% |
| All Japonica | 496 | 92.14% | 7.86% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 371 | 88.68% | 11.32% |
| Indica II | 209 | 44.50% | 55.50% |
| Indica Intermediate | 206 | 65.53% | 34.47% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224634617 | C->T | INTERGENIC | None |