Detailed information of SNP:
|
SNP ID:
sf0224638447(Gbrowse)
Chromosome: chr02 Position: 24638447 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.38% | 23.62% |
| All Indica | 798 | 80.45% | 19.55% |
| All Japonica | 497 | 73.04% | 26.96% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 211 | 67.77% | 32.23% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224638447 | A->T | INTERGENIC | None |