Detailed information of SNP:
|
SNP ID:
sf0224646655(Gbrowse)
Chromosome: chr02 Position: 24646655 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 95.51% | 4.49% |
| All Indica | 770 | 95.32% | 4.68% |
| All Japonica | 495 | 96.36% | 3.64% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 195 | 87.69% | 12.31% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 83.70% | 16.30% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224646655 | G->A | INTERGENIC | None |