Detailed information of SNP:
|
SNP ID:
sf0224655450(Gbrowse)
Chromosome: chr02 Position: 24655450 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 75.41% | 24.59% |
| All Indica | 789 | 64.39% | 35.61% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 372 | 83.06% | 16.94% |
| Indica II | 207 | 36.71% | 63.29% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224655450 | G->C | INTERGENIC | None |