Detailed information of SNP:
|
SNP ID:
sf0224658733(Gbrowse)
Chromosome: chr02 Position: 24658733 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 94.69% | 5.31% |
| All Indica | 793 | 97.98% | 2.02% |
| All Japonica | 496 | 89.52% | 10.48% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 334 | 89.22% | 10.78% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224658733 | C->T | INTERGENIC | None |