Detailed information of SNP:
|
SNP ID:
sf0224667537(Gbrowse)
Chromosome: chr02 Position: 24667537 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 91.35% | 8.65% |
| All Indica | 798 | 97.62% | 2.38% |
| All Japonica | 490 | 79.80% | 20.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 333 | 78.08% | 21.92% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224667537 | T->C | INTERGENIC | None |