Detailed information of SNP:
|
SNP ID:
sf0224668897(Gbrowse)
Chromosome: chr02 Position: 24668897 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 98.66% | 1.34% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 431 | 96.06% | 3.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 295 | 98.98% | 1.02% |
| Tropical Japonica | 82 | 89.02% | 10.98% |
| Japonica Intermediate | 54 | 90.74% | 9.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224668897 | C->T | INTERGENIC | None |