Detailed information of SNP:
|
SNP ID:
sf0224672389(Gbrowse)
Chromosome: chr02 Position: 24672389 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 79.62% | 20.38% |
| All Indica | 794 | 71.91% | 28.09% |
| All Japonica | 496 | 91.73% | 8.27% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 211 | 52.61% | 47.39% |
| Indica Intermediate | 209 | 72.73% | 27.27% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224672389 | T->C | INTERGENIC | None |