Detailed information of SNP:
|
SNP ID:
sf0224672630(Gbrowse)
Chromosome: chr02 Position: 24672630 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 80.64% | 19.36% |
| All Indica | 792 | 73.36% | 26.64% |
| All Japonica | 495 | 92.12% | 7.88% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 371 | 82.75% | 17.25% |
| Indica II | 211 | 58.77% | 41.23% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 69.57% | 30.43% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224672630 | C->T | INTERGENIC | None |