Detailed information of SNP:
|
SNP ID:
sf0224672911(Gbrowse)
Chromosome: chr02 Position: 24672911 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 80.98% | 19.02% |
| All Indica | 795 | 74.09% | 25.91% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224672911 | C->T | INTERGENIC | None |