Detailed information of SNP:
|
SNP ID:
sf0224673040(Gbrowse)
Chromosome: chr02 Position: 24673040 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.11% | 19.89% |
| All Indica | 798 | 73.31% | 26.69% |
| All Japonica | 497 | 92.15% | 7.85% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224673040 | C->T | INTERGENIC | None |