Detailed information of SNP:



SNP ID: sf0224673040(Gbrowse)

Chromosome: chr02

Position: 24673040
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 80.11% 19.89%
All Indica798 73.31% 26.69%
All Japonica497 92.15% 7.85%
Aus67 76.12% 23.88%
Indica I374 83.16% 16.84%
Indica II213 56.81% 43.19%
Indica Intermediate211 72.51% 27.49%
Temperate Japonica335 98.51% 1.49%
Tropical Japonica94 69.15% 30.85%
Japonica Intermediate68 92.65% 7.35%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0224673040 C->T INTERGENIC None