Detailed information of SNP:
|
SNP ID:
sf0224673424(Gbrowse)
Chromosome: chr02 Position: 24673424 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 80.45% | 19.55% |
| All Indica | 732 | 75.55% | 24.45% |
| All Japonica | 494 | 90.28% | 9.72% |
| Aus | 55 | 81.82% | 18.18% |
| Indica I | 375 | 79.73% | 20.27% |
| Indica II | 155 | 79.35% | 20.65% |
| Indica Intermediate | 202 | 64.85% | 35.15% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 92 | 60.87% | 39.13% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0224673424 | C->T | INTERGENIC | None |